The family members of the girl were looking for her after she went missing on Tuesday evening.
On Wednesday morning, she was discovered in a field in a naked and injured state.
The victim was rushed to a nearby hospital which had referred her to Meerut for better treatment.
The accused, who has been identified as 24-year-old Dan Singh, was nabbed after police scanned CCTV footage.
Singh, a resident of the same village, opened fire when police tried to nab him. The accused was injured in his leg in a retaliatory firing by police.
Dr. Anju Singh, who conducted the girl's medical examination, did not rule out a rape incident by more than one person owing to multiple injuries on her private parts and said the victim was hit with a blunt object on face.